Study finds large-scale expansion of stem rust resistance gene in barley and oat

10 December 2020

Stem rust is one of the most devastating fungal diseases of wheat and historically has caused dramatic crop failures resulting in significant yield losses worldwide.

The disease has re-emerged in major wheat growing areas and an epidemic could cause a major threat to global food security.

Scientists, including researchers from our partner the John Innes Centre, have identified a resistance gene, Sr22, as one of the few characterised genes that protects against many stem rust races. Sr22 was recently incorporated into a multi-Sr transgene stack and found to achieve complete field-immunity to stem rust.

As a result of this success, scientists are looking for ways to deploy the gene in the field.

A new study in the MPMI journal describes the functional and evolutionary characterisation of Sr22, based on a comprehensive search of the genomes and transcriptomes of 80 plant species. The study found that the gene is conserved among grasses in the Triticeae and Poeae lineages.

“We originally set out to mine Sr22 alleles and their function then expanded the work to include a large-scale comparison of the Sr22 locus across monocot species,” explained Dr Guru Radhakrishnan of the John Innes Centre. “This is when we discovered the surprising large-scale expansion of the Sr22 locus in the barley and oat lineages.”

This study also describes the sequence variation between different Sr22 alleles, which may be due to intra-allelic recombination. Three of the alleles were functionally characterised in transgenic wheat and two of these were found to confer resistance to the notorious Ug99 isolate of the wheat stem rust pathogen.

“To our knowledge, this is the first study to comprehensively explore the evolution of a resistance gene across a broad range of monocot lineages in addition to exploring allelic variation between accessions of monocot species,” added first author Dr M. Asyraf Md. Hatta.

“With more high-quality monocot genome and transcriptome assemblies becoming available, such studies are expected to provide valuable insights on the evolution of resistance genes in this agriculturally important group of plants.”

The study contributes valuable knowledge on plant disease resistance gene function and evolution, which can facilitate the improvement of crops against agriculturally important diseases, such as stem rust.